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Mar 31, 2022

Download FASTQ files from European Nucleotide Archive (ENA)

https://github.com/wwood/ena-fast-download

Requirements

aspera client : https://downloads.asperasoft.com/en/downloads/8?list
curl
Python 3

# set path for aspera. check your aspera directory path
PATH=$PATH:/home/lee/.aspera/connect/bin
export PATH

usage: ena-fast-download.py [-h] [--output_directory OUTPUT_DIRECTORY]
                            [--ssh_key SSH_KEY ( for OSX) ]
                            run_identifier

ena-fast-download.py --output_directory /output/directory ERR1739691

Babyplots : interactive 3D graphs

Babyplots Documentation

Babyplots is an easy to use library for creating interactive 3d graphs for exploring and presenting data.

Babyplots is available as a JavaScript library, as an R package, as a Python package, and as an add-in for Microsoft PowerPoint. While the R package, Python package and JavaScript library allow the creation of new plots, the PowerPoint add-in can only be used to display exported plots. This website also provides an interactive node-based editor for creating babyplots visualizations called NPC (node plot creator) or simply Creator.

Find the individual documentation pages through the links below:

Dragging from input nodes

 https://bp.bleb.li/documentation/