Download FASTQ files from European Nucleotide Archive (ENA)

https://github.com/wwood/ena-fast-download

Requirements

aspera client : https://downloads.asperasoft.com/en/downloads/8?list
curl
Python 3

# set path for aspera. check your aspera directory path
PATH=$PATH:/home/lee/.aspera/connect/bin
export PATH

usage: ena-fast-download.py [-h] [--output_directory OUTPUT_DIRECTORY]
                            [--ssh_key SSH_KEY ( for OSX) ]
                            run_identifier

ena-fast-download.py --output_directory /output/directory ERR1739691