Adapter trimming tools

Trimmomatic : easy to use, seems it's not updated well

http://www.usadellab.org/cms/?page=trimmomatic

Cutadapt : many option

https://cutadapt.readthedocs.io/en/stable/guide.html

BBDuk : fast 

https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbduk-guide/

 

 

Practical comparison of NGS adapter trimming tools

http://bogdan.org.ua/2016/06/01/practical-comparison-of-ngs-adapter-trimming-tools.html

Introducing BBDuk: Adapter/Quality Trimming and Filtering

 http://seqanswers.com/forums/showthread.php?t=42776

Adapters trimming: Cutadapt vs Trimmomatic

http://seqanswers.com/forums/showthread.php?t=40692

Comparing quality trimming and adapter removing tools

https://www.reddit.com/r/bioinformatics/comments/63nu1f/comparing_quality_trimming_and_adapter_removing/